R/GenomicTools-package | Loose Collection of Expression and Genotype Analysis Tools, including (e)QTL and MDR. |
annotTrack | Example Annotation Track |
eQTL | Perform an eQTL Analysis |
geneEXP | Simulated Expression Data |
genotData | Simulated Genotype Data |
getKEGGOrganisms | Get a list of organisms in the KEGG database |
getKEGGPathway | Get a list of genes in a specific KEGG pathway. |
getKEGGPathwayImage | Get a visualization of a specific KEGG pathway. |
getKEGGPathwayOverview | Get a list of pathways in a specific organism. |
getRSLocation | Get the location of an SNP. |
gtfToBed | Extract the Chromosomal Information Required in bed Format from an imported gtf table. |
mdr | Perform a MDR. |
mdrEnsemble | Ensemble Classification Using an Existing MDR Object |
mdrExample | Example Data for MDR |
phenoData | Simulated Phenotype Data |
plot-method | Plot an eqtl Object |
plot-method | Plot an MDR Object |
plot-method | Plot an qtlRes Object |
plot.eqtl | Plot an eqtl Object |
plot.mdr | Plot an MDR Object |
plot.qtlRes | Plot an qtlRes Object |
print-method | Print an eqtl Object |
print-method | Print an mdr Object |
print.eqtl | Print an eqtl Object |
print.mdr | Print an mdr Object |
QTL | Perform a QTL Analysis |
recodeData | Recode a Genotype Data Matrix. |
seqlength | Get the sequence length of a fa-object. |
summary-method | Summarize an eqtl Object |
summary.eqtl | Summarize an eqtl Object |