scMET-package | 'scMET': Bayesian modelling of DNA methylation at single-cell resolution. |
bb_mle | Beta binomial maximum likelihood estimation (BB MLE) |
create_design_matrix | Create design matrix |
detect_hvf | Detect highly (or lowly) variable features with scMET |
detect_hvf_lvf | Detect highly (or lowly) variable features with scMET |
detect_lvf | Detect highly (or lowly) variable features with scMET |
differential_methylation, | Differential testing using scMET |
differential_test, | Differential testing using scMET |
differential_variability | Differential testing using scMET |
sce_to_scmet | Convert from SingleCellExperiment to scmet object |
scMET | Perform inference with scMET |
scmet | Perform inference with scMET |
scmet_differential | Differential testing using scMET |
scmet_diff_dt | Synthetic methylation data from two groups of cells |
scmet_dt | Synthetic methylation data from a single population |
scmet_hvf | Detect highly (or lowly) variable features with scMET |
scmet_hvf_lvf | Detect highly (or lowly) variable features with scMET |
scmet_lvf | Detect highly (or lowly) variable features with scMET |
scmet_mcmc | Perform inference with scMET |
scmet_plot_efdr_efnr_grid | Plot EFDR/EFNR grid |
scmet_plot_estimated_vs_true | Plot true versus inferred parameter estimated. |
scmet_plot_ma | MA plot for differential analysis |
scmet_plot_mean_var | Plotting mean-variability relationship |
scmet_plot_vf_tail_prob | Plot tail probabilities for variable feature analysis |
scmet_plot_volcano | Volcano plot for differential analysis |
scmet_simulate | Simulate methylation data from scMET. |
scmet_simulate_diff | Simulate differential methylation data from scMET. |
scmet_to_sce | Convert from scmet to SingleCellExperiment object. |
scmet_vb | Perform inference with scMET |